PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G144400.1.p
Common NamePRUPE_ppa008085mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 347aa    MW: 38475 Da    PI: 7.6275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G144400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08174221455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  Prupe.5G144400.1.p 174 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 221
                         8*************************9....55599***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.32E-10168225No hitNo description
SuperFamilySSF474592.75E-16168236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16170234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAAFSYHPAF LLDSIFLPYT PNNINIDDHF SPSYPSEPLI QEVHNTDSRA VESSCTVDHS  60
SAKVSLSDNE PSVTKKQSTE SSTVVDKLET GEQVTQKVTS MDKKRKNRNG SSLNSAQSKA  120
SREHKGKKQK KLDGAEKAGE KKAKSDKKDQ VKVGDEPPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KMLQRLVPGC DKVTGRAVML DEIINYVQSL QNQVEFLSMK LASVNPLFYD  240
FGMDLGALMV KPERLSSMAS PYPSVPQCSP TQPTPFADTS PNITTNTTFS TANNYPFPDS  300
SASILLQQGQ RPNDFSQDSE SLMWDVEDQR QNFLNPSGFG NNFQLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408783e-80EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209284.10.0hypothetical protein PRUPE_ppa008085mg
TrEMBLM5WMI50.0M5WMI5_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g00430.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-58bHLH family protein